Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:43448399..43449108-chr3:67720703..67721562,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM19A1-1	chr3:67721253-67721428	ENSG00000241316
2	lnc-FAM19A1-1	chr3:67721253-67721428	ENSG00000241316
3	lnc-FAM19A1-1	chr3:67721253-67721428	NR_109992
4	lnc-FAM19A1-1	chr3:67720240-67721428	NONHSAT090319

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11127674	1.00[EUR][1000 genomes]
rs13318110	1.00[EUR][1000 genomes]
rs17046784	1.00[AMR][1000 genomes]
rs17046807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046819	1.00[AMR][1000 genomes]
rs2634726	1.00[EUR][1000 genomes]
rs57076692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58050190	1.00[AMR][1000 genomes]
rs58257624	1.00[AMR][1000 genomes]
rs60234547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795974	1.00[EUR][1000 genomes]
rs6798231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917913	1.00[EUR][1000 genomes]
rs72917922	1.00[EUR][1000 genomes]
rs9828107	1.00[EUR][1000 genomes]
rs9846683	1.00[EUR][1000 genomes]
rs9852077	1.00[EUR][1000 genomes]
rs9867357	1.00[EUR][1000 genomes]
rs9868744	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428739	chr3:67656829-67730379	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67706800-67726600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:67706800-67727200	Weak transcription	A549	lung
5	chr3:67712200-67728400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:67716200-67724200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:67717200-67730800	Weak transcription	Gastric	stomach
8	chr3:67717400-67723600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:67717400-67724600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:67717400-67728200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:67717600-67728000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:67719000-67724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:67721000-67721400	Strong transcription	Left Ventricle	heart
14	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas

Quick Search: