Variant report

Variant	rs60234547
Chromosome Location	chr3:67734122-67734123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11127674	1.00[EUR][1000 genomes]
rs13318110	1.00[EUR][1000 genomes]
rs17046784	1.00[AMR][1000 genomes]
rs17046807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046819	1.00[AMR][1000 genomes]
rs2634726	1.00[EUR][1000 genomes]
rs57076692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58050190	1.00[AMR][1000 genomes]
rs58257624	1.00[AMR][1000 genomes]
rs58304740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795974	1.00[EUR][1000 genomes]
rs6798231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917913	1.00[EUR][1000 genomes]
rs72917922	1.00[EUR][1000 genomes]
rs9828107	1.00[EUR][1000 genomes]
rs9846683	1.00[EUR][1000 genomes]
rs9852077	1.00[EUR][1000 genomes]
rs9867357	1.00[EUR][1000 genomes]
rs9868744	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas
4	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
5	chr3:67727600-67747600	Weak transcription	A549	lung
6	chr3:67727800-67755000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:67729600-67735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:67729800-67735800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:67730000-67734200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:67730200-67736000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:67731200-67735800	Weak transcription	Liver	Liver
12	chr3:67733400-67737400	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:67733600-67734200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:67733600-67734400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr3:67733600-67735800	Enhancers	Primary T cells from cord blood	blood
16	chr3:67733600-67735800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:67733600-67735800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:67733600-67735800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:67733600-67735800	Enhancers	GM12878-XiMat	blood
20	chr3:67733600-67736800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr3:67733800-67734600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:67733800-67735800	Enhancers	Primary B cells from cord blood	blood
23	chr3:67733800-67736000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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