Variant report

Variant	rs58306502
Chromosome Location	chr3:143462237-143462238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16854224	1.00[ASN][1000 genomes]
rs16854227	1.00[ASN][1000 genomes]
rs2069040	1.00[ASN][1000 genomes]
rs57235093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58071776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58187430	1.00[ASN][1000 genomes]
rs58518314	1.00[ASN][1000 genomes]
rs58881945	1.00[ASN][1000 genomes]
rs58921238	1.00[AMR][1000 genomes]
rs60468477	1.00[ASN][1000 genomes]
rs67534321	1.00[ASN][1000 genomes]
rs67785207	1.00[ASN][1000 genomes]
rs73009475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009477	1.00[ASN][1000 genomes]
rs7616384	1.00[ASN][1000 genomes]
rs7628206	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143438400-143469800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:143442200-143470200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:143447400-143469800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:143450800-143488600	Weak transcription	Ovary	ovary
6	chr3:143457200-143488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:143458000-143494400	Weak transcription	Psoas Muscle	Psoas
8	chr3:143460600-143468200	Weak transcription	Fetal Lung	lung
9	chr3:143460600-143469000	Weak transcription	Primary T cells from cord blood	blood
10	chr3:143462200-143462400	ZNF genes & repeats	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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