Variant report

Variant	rs58312368
Chromosome Location	chr1:160550910-160550911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160510071..160512136-chr1:160549726..160552800,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56701251	0.86[AFR][1000 genomes]
rs59161840	0.86[AFR][1000 genomes]
rs6666153	0.86[AFR][1000 genomes]
rs6680387	0.82[AFR][1000 genomes]
rs74124877	1.00[AFR][1000 genomes]
rs74124878	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160549200-160554600	Weak transcription	Liver	Liver
2	chr1:160549400-160551000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:160549400-160552000	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:160549400-160552400	Enhancers	K562	blood
5	chr1:160549600-160551000	Enhancers	Fetal Thymus	thymus
6	chr1:160549600-160551600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:160549600-160551600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:160549600-160551600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:160549600-160552000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:160549600-160552000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:160549600-160552000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:160549600-160552000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:160549600-160552400	Enhancers	Fetal Intestine Small	intestine
14	chr1:160549800-160551200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr1:160549800-160551200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:160549800-160551600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:160549800-160551800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:160549800-160551800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr1:160549800-160552000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr1:160549800-160552000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:160550000-160552000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr1:160550200-160552400	Enhancers	Fetal Intestine Large	intestine
23	chr1:160550400-160551600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:160550600-160552000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:160550800-160551200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:160550800-160552000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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