Variant report

Variant	rs74124878
Chromosome Location	chr1:160554855-160554856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56701251	0.86[AFR][1000 genomes]
rs58312368	1.00[AFR][1000 genomes]
rs59161840	0.86[AFR][1000 genomes]
rs6666153	0.86[AFR][1000 genomes]
rs6680387	0.82[AFR][1000 genomes]
rs74124877	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160551200-160558400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:160551600-160557400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:160551600-160558600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:160552000-160555000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:160554200-160556000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:160554400-160555600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:160554600-160555000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:160554600-160555000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr1:160554600-160555000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:160554600-160555200	Enhancers	GM12878-XiMat	blood
11	chr1:160554600-160555600	Enhancers	Liver	Liver
12	chr1:160554600-160555800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:160554800-160555000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:160554800-160555000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:160554800-160555600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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