Variant report

Variant	rs58321558
Chromosome Location	chr6:134490578-134490579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134490269..134491900-chr6:134961442..134963589,2	MCF-7	breast:
2	chr6:134490223..134492487-chr6:135143409..135145243,2	MCF-7	breast:
3	chr6:134488804..134492618-chr6:135142159..135144506,3	MCF-7	breast:
4	chr11:65267593..65268286-chr6:134489835..134490681,2	Hela-S3	cervix:
5	chr6:10415237..10416198-chr6:134489491..134490609,3	Hela-S3	cervix:
6	chr6:134489889..134490640-chr8:90996409..90997196,2	Hela-S3	cervix:
7	chr1:145382505..145383062-chr6:134489940..134490655,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000137203	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000201558	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6911375	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73560805	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402582	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134476800-134495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134480200-134495400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:134482600-134490800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:134482800-134490600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:134482800-134490800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:134482800-134491000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:134483000-134490800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:134483600-134490800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:134484200-134491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:134485600-134495000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:134487400-134492000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:134487600-134490600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:134487600-134491000	Weak transcription	Small Intestine	intestine
14	chr6:134487600-134495000	Weak transcription	Fetal Brain Female	brain
15	chr6:134487800-134490800	Weak transcription	Psoas Muscle	Psoas
16	chr6:134487800-134492600	Weak transcription	Fetal Brain Male	brain
17	chr6:134488000-134491000	Weak transcription	Colonic Mucosa	Colon
18	chr6:134488000-134491000	Weak transcription	Esophagus	oesophagus
19	chr6:134488200-134492200	Weak transcription	Stomach Mucosa	stomach
20	chr6:134488400-134490800	Weak transcription	HepG2	liver
21	chr6:134488400-134491000	Weak transcription	Fetal Lung	lung
22	chr6:134488600-134490800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:134488600-134490800	Strong transcription	Adipose Nuclei	Adipose
24	chr6:134488800-134490800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:134488800-134490800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:134488800-134490800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr6:134488800-134490800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:134488800-134490800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:134488800-134490800	Strong transcription	Left Ventricle	heart
30	chr6:134488800-134490800	Strong transcription	Lung	lung
31	chr6:134488800-134490800	Strong transcription	Thymus	Thymus
32	chr6:134488800-134490800	Strong transcription	HMEC	breast
33	chr6:134488800-134490800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:134488800-134490800	Strong transcription	NHLF	lung
35	chr6:134488800-134491000	Strong transcription	Primary T cells from cord blood	blood
36	chr6:134488800-134491000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:134488800-134491000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:134488800-134492800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:134488800-134494000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:134489000-134490600	Active TSS	Hela-S3	cervix
41	chr6:134489000-134490600	Strong transcription	NHEK	skin
42	chr6:134489000-134490800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:134489000-134490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:134489000-134490800	Strong transcription	Osteobl	bone
45	chr6:134489000-134491200	Strong transcription	Fetal Intestine Large	intestine
46	chr6:134489000-134491200	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:134489000-134491200	Strong transcription	Placenta	Placenta
48	chr6:134489000-134491400	Strong transcription	HSMM	muscle
49	chr6:134489000-134491800	Strong transcription	Fetal Stomach	stomach
50	chr6:134489200-134490800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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