Variant report

Variant	rs73560805
Chromosome Location	chr6:134489577-134489578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:208394188..208395017-chr6:134489482..134490047,2	Hela-S3	cervix:
2	chr11:65624803..65625349-chr6:134489462..134490120,2	Hela-S3	cervix:
3	chr6:134488804..134492618-chr6:135142159..135144506,3	MCF-7	breast:
4	chr11:61100446..61101081-chr6:134488816..134489583,2	Hela-S3	cervix:
5	chr6:28303343..28304144-chr6:134489414..134490036,2	Hela-S3	cervix:
6	chr6:134485302..134489847-chr6:134489931..134495982,8	MCF-7	breast:
7	chr6:134488060..134490508-chr6:134496584..134498666,2	MCF-7	breast:
8	chr6:10415237..10416198-chr6:134489491..134490609,3	Hela-S3	cervix:
9	chr16:31128652..31129422-chr6:134489426..134490210,2	Hela-S3	cervix:
10	chr17:41437673..41438650-chr6:134488903..134489803,2	Hela-S3	cervix:
11	chr6:134487213..134489958-chr6:134952355..134954629,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172757	Chromatin interaction
ENSG00000118260	Chromatin interaction
ENSG00000262766	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000149476	Chromatin interaction
ENSG00000223725	Chromatin interaction
ENSG00000103510	Chromatin interaction
ENSG00000167986	Chromatin interaction
ENSG00000118515	Chromatin interaction
ENSG00000137203	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58321558	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134476800-134495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134480200-134495400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:134482400-134490000	Weak transcription	Fetal Kidney	kidney
4	chr6:134482600-134490800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:134482800-134490000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:134482800-134490000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:134482800-134490400	Weak transcription	A549	lung
8	chr6:134482800-134490600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:134482800-134490800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:134482800-134491000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:134483000-134489600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:134483000-134490200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:134483000-134490800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:134483200-134490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:134483600-134490800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:134483800-134489800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:134484200-134491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:134485200-134490000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:134485600-134495000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:134487200-134489800	Weak transcription	HSMMtube	muscle
21	chr6:134487200-134490000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:134487400-134492000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:134487600-134490000	Weak transcription	Primary B cells from cord blood	blood
24	chr6:134487600-134490600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:134487600-134491000	Weak transcription	Small Intestine	intestine
26	chr6:134487600-134495000	Weak transcription	Fetal Brain Female	brain
27	chr6:134487800-134490200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:134487800-134490200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr6:134487800-134490800	Weak transcription	Psoas Muscle	Psoas
30	chr6:134487800-134492600	Weak transcription	Fetal Brain Male	brain
31	chr6:134488000-134489600	Strong transcription	Brain Angular Gyrus	brain
32	chr6:134488000-134490000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:134488000-134491000	Weak transcription	Colonic Mucosa	Colon
34	chr6:134488000-134491000	Weak transcription	Esophagus	oesophagus
35	chr6:134488200-134489800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:134488200-134489800	Weak transcription	Liver	Liver
37	chr6:134488200-134490000	Weak transcription	Fetal Thymus	thymus
38	chr6:134488200-134492200	Weak transcription	Stomach Mucosa	stomach
39	chr6:134488400-134490000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:134488400-134490800	Weak transcription	HepG2	liver
41	chr6:134488400-134491000	Weak transcription	Fetal Lung	lung
42	chr6:134488600-134490800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:134488600-134490800	Strong transcription	Adipose Nuclei	Adipose
44	chr6:134488800-134489600	Strong transcription	Spleen	Spleen
45	chr6:134488800-134489800	Genic enhancers	Pancreas	Pancrea
46	chr6:134488800-134490000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:134488800-134490000	Strong transcription	Brain Anterior Caudate	brain
48	chr6:134488800-134490000	Strong transcription	Brain Substantia Nigra	brain
49	chr6:134488800-134490000	Strong transcription	Fetal Intestine Small	intestine
50	chr6:134488800-134490000	Strong transcription	NH-A	brain

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