Variant report

Variant	rs58323070
Chromosome Location	chr3:97994145-97994146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56695531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56741748	0.83[AMR][1000 genomes]
rs57210707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57521928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57711450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58134115	1.00[AMR][1000 genomes]
rs58952611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974727	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59291702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59403104	1.00[AMR][1000 genomes]
rs59461359	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605835	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878229	1.00[AMR][1000 genomes]
rs59886059	1.00[AMR][1000 genomes]
rs60427156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60567919	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929044	0.83[AMR][1000 genomes]
rs72929064	0.83[AMR][1000 genomes]
rs72931064	1.00[AMR][1000 genomes]
rs72931068	1.00[AMR][1000 genomes]
rs72931070	1.00[AMR][1000 genomes]
rs72931073	1.00[AMR][1000 genomes]
rs72931074	1.00[AMR][1000 genomes]
rs72931081	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv432462	chr3:97918267-98001710	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv877212	chr3:97931105-98033400	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1004762	chr3:97935701-98000227	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97993400-97994400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:97993800-97994400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:97994000-97994200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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