Variant report

Variant	rs56695531
Chromosome Location	chr3:97920324-97920325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56741748	0.83[AMR][1000 genomes]
rs57210707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57521928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57711450	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58134115	1.00[AMR][1000 genomes]
rs58323070	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974727	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59291702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330240	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59403104	1.00[AMR][1000 genomes]
rs59461359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878229	1.00[AMR][1000 genomes]
rs59886059	1.00[AMR][1000 genomes]
rs60427156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60567919	1.00[AMR][1000 genomes]
rs72929044	0.83[AMR][1000 genomes]
rs72929064	0.83[AMR][1000 genomes]
rs72931064	1.00[AMR][1000 genomes]
rs72931068	1.00[AMR][1000 genomes]
rs72931070	1.00[AMR][1000 genomes]
rs72931073	1.00[AMR][1000 genomes]
rs72931074	1.00[AMR][1000 genomes]
rs72931081	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv2566065	chr3:97873442-97931531	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv5601	chr3:97874279-97931369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3428925	chr3:97874391-97931104	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3326206	chr3:97874447-97931276	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv513059	chr3:97875075-97932953	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3430659	chr3:97878961-97933659	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3504753	chr3:97881256-97920688	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
15	esv3504754	chr3:97881256-97920688	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
16	esv3520819	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
17	esv3520820	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	esv2762341	chr3:97899320-97926120	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
19	esv13127	chr3:97899419-97939393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv870074	chr3:97903273-97948850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv2763288	chr3:97908670-97947253	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
22	esv13073	chr3:97908878-97924741	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	n/a
23	esv3418224	chr3:97915908-97926340	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
24	esv3373459	chr3:97917897-97928418	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
25	esv3343883	chr3:97917974-97928437	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
26	nsv432462	chr3:97918267-98001710	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv877211	chr3:97919363-97958280	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97917800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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