Variant report

Variant	rs58328806
Chromosome Location	chr3:159197439-159197440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11927927	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13322270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28878913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59912597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60623370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73018393	0.94[AFR][1000 genomes]
rs73018395	0.94[AFR][1000 genomes]
rs73018397	0.94[AFR][1000 genomes]
rs73020386	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830750	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv877695	chr3:159152259-159254385	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877696	chr3:159184569-159257961	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159197400-159198600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159197400-159198600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:159197400-159198600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:159197400-159198600	Enhancers	NHEK	skin
5	chr3:159197400-159199000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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