Variant report

Variant	rs73018397
Chromosome Location	chr3:159172786-159172787
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58328806	0.94[AFR][1000 genomes]
rs59912597	0.94[AFR][1000 genomes]
rs73018393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020386	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877695	chr3:159152259-159254385	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159167000-159173400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159167200-159173400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:159167200-159173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:159167800-159176000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:159169200-159173400	Weak transcription	HMEC	breast
6	chr3:159169400-159173000	Weak transcription	Osteobl	bone
7	chr3:159169600-159173000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:159169800-159173600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:159169800-159175200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:159172000-159176000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:159172200-159175800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:159172200-159175800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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