Variant report

Variant	rs58338355
Chromosome Location	chr3:120913174-120913175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56152560	1.00[AMR][1000 genomes]
rs56183568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56217411	1.00[AMR][1000 genomes]
rs56906034	1.00[AMR][1000 genomes]
rs57649553	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57745805	1.00[AMR][1000 genomes]
rs58297766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58466835	1.00[AMR][1000 genomes]
rs58922309	1.00[AMR][1000 genomes]
rs59489729	1.00[AMR][1000 genomes]
rs59634035	1.00[AMR][1000 genomes]
rs60103718	1.00[AMR][1000 genomes]
rs60639242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61059986	1.00[AMR][1000 genomes]
rs61661959	1.00[AMR][1000 genomes]
rs73855304	1.00[AMR][1000 genomes]
rs73855313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855318	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855320	1.00[AMR][1000 genomes]
rs73855330	1.00[AMR][1000 genomes]
rs73855332	1.00[AMR][1000 genomes]
rs73855340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855344	1.00[AMR][1000 genomes]
rs73855345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855346	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855347	1.00[AMR][1000 genomes]
rs73855348	1.00[AMR][1000 genomes]
rs73855349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855356	1.00[AMR][1000 genomes]
rs73855358	0.94[AFR][1000 genomes]
rs73855359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855360	1.00[AMR][1000 genomes]
rs73855361	1.00[AMR][1000 genomes]
rs73855375	1.00[AMR][1000 genomes]
rs73855376	1.00[AMR][1000 genomes]
rs73855378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855380	1.00[AMR][1000 genomes]
rs73855381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1012777	chr3:120883846-120974864	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120897800-120914600	Weak transcription	Ovary	ovary

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