Variant report

Variant	rs61059986
Chromosome Location	chr3:120954336-120954337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs56152560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56183568	1.00[AMR][1000 genomes]
rs56217411	1.00[AMR][1000 genomes]
rs56906034	1.00[AMR][1000 genomes]
rs57649553	1.00[AMR][1000 genomes]
rs57745805	1.00[AMR][1000 genomes]
rs58297766	1.00[AMR][1000 genomes]
rs58338355	1.00[AMR][1000 genomes]
rs58466835	1.00[AMR][1000 genomes]
rs58922309	1.00[AMR][1000 genomes]
rs59489729	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59634035	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60103718	1.00[AMR][1000 genomes]
rs60639242	1.00[AMR][1000 genomes]
rs61004683	1.00[AMR][1000 genomes]
rs61661959	1.00[AMR][1000 genomes]
rs73855313	1.00[AMR][1000 genomes]
rs73855318	1.00[AMR][1000 genomes]
rs73855319	1.00[AMR][1000 genomes]
rs73855320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855330	1.00[AMR][1000 genomes]
rs73855332	1.00[AMR][1000 genomes]
rs73855340	1.00[AMR][1000 genomes]
rs73855343	1.00[AMR][1000 genomes]
rs73855344	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855345	1.00[AMR][1000 genomes]
rs73855346	1.00[AMR][1000 genomes]
rs73855347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855349	1.00[AMR][1000 genomes]
rs73855356	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855359	1.00[AMR][1000 genomes]
rs73855360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855375	1.00[AMR][1000 genomes]
rs73855376	1.00[AMR][1000 genomes]
rs73855378	1.00[AMR][1000 genomes]
rs73855380	1.00[AMR][1000 genomes]
rs73855381	1.00[AMR][1000 genomes]
rs73855385	1.00[AMR][1000 genomes]
rs73855388	1.00[AMR][1000 genomes]
rs73855389	1.00[AMR][1000 genomes]
rs73855390	1.00[AMR][1000 genomes]
rs73855391	1.00[AMR][1000 genomes]
rs73855392	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1012777	chr3:120883846-120974864	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv829701	chr3:120935402-121115932	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv517501	chr3:120941578-120970900	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv518828	chr3:120941578-120977383	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120936400-120955800	Weak transcription	Ovary	ovary
2	chr3:120945400-120965200	Weak transcription	Brain Anterior Caudate	brain
3	chr3:120951800-120962600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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