Variant report

Variant	rs58338691
Chromosome Location	chr3:53414178-53414179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11919567	1.00[AMR][1000 genomes]
rs11920772	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921961	1.00[AMR][1000 genomes]
rs11925433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030942	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17052997	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053116	1.00[AMR][1000 genomes]
rs58488663	1.00[AMR][1000 genomes]
rs59254994	1.00[AMR][1000 genomes]
rs59437060	1.00[AMR][1000 genomes]
rs60350276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675461	1.00[AMR][1000 genomes]
rs61299945	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6787817	1.00[AMR][1000 genomes]
rs68140464	1.00[AMR][1000 genomes]
rs72954817	1.00[AMR][1000 genomes]
rs72954820	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954825	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954827	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957594	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72964389	1.00[AMR][1000 genomes]
rs72964394	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876801	chr3:53325905-53467506	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv876802	chr3:53325905-53470863	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53413600-53414600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:53414000-53414600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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