Variant report

Variant	rs72954827
Chromosome Location	chr3:53389658-53389659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11919567	1.00[AMR][1000 genomes]
rs11920772	1.00[AMR][1000 genomes]
rs11921961	1.00[AMR][1000 genomes]
rs11925433	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030942	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17052997	1.00[AMR][1000 genomes]
rs17053116	1.00[AMR][1000 genomes]
rs58338691	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58488663	1.00[AMR][1000 genomes]
rs59254994	1.00[AMR][1000 genomes]
rs59437060	1.00[AMR][1000 genomes]
rs60350276	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675461	1.00[AMR][1000 genomes]
rs61299945	1.00[AMR][1000 genomes]
rs6787817	1.00[AMR][1000 genomes]
rs68140464	1.00[AMR][1000 genomes]
rs72954817	1.00[AMR][1000 genomes]
rs72954820	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957594	1.00[AMR][1000 genomes]
rs72964389	1.00[AMR][1000 genomes]
rs72964394	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876801	chr3:53325905-53467506	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv876802	chr3:53325905-53470863	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53385400-53390600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:53387200-53392800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:53388200-53390400	Enhancers	HUVEC	blood vessel
4	chr3:53388600-53389800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:53388600-53389800	Enhancers	NH-A	brain
6	chr3:53388600-53390200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:53388600-53390800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:53388800-53389800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:53388800-53389800	Enhancers	K562	blood
10	chr3:53388800-53390400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:53388800-53390400	Enhancers	Hela-S3	cervix
12	chr3:53389000-53389800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:53389400-53391000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:53389600-53391200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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