Variant report

Variant	rs58357213
Chromosome Location	chr6:133869160-133869161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57347183	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59883609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59937049	1.00[AMR][1000 genomes]
rs73776046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133861600-133872400	Weak transcription	HSMM	muscle
3	chr6:133862800-133869200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:133863800-133869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:133864000-133869200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:133864000-133869400	Weak transcription	A549	lung
7	chr6:133864000-133869400	Weak transcription	NH-A	brain
8	chr6:133864000-133869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:133864200-133870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:133864600-133869600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:133865600-133870800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133866000-133870400	Weak transcription	Gastric	stomach
13	chr6:133866000-133872800	Weak transcription	Aorta	Aorta
14	chr6:133867400-133869800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:133867400-133872400	Weak transcription	NHDF-Ad	bronchial
16	chr6:133867600-133869200	Weak transcription	Fetal Lung	lung
17	chr6:133867600-133869200	Weak transcription	Osteobl	bone
18	chr6:133867600-133869400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:133867600-133872400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:133867800-133869200	Weak transcription	NHLF	lung
21	chr6:133867800-133869600	Weak transcription	Fetal Brain Female	brain
22	chr6:133868200-133869600	Weak transcription	Fetal Brain Male	brain
23	chr6:133868400-133870400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:133868400-133872200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:133868400-133872800	Enhancers	HSMMtube	muscle
26	chr6:133868600-133869600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:133868600-133872400	Weak transcription	Fetal Stomach	stomach
28	chr6:133868800-133869200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:133869000-133869400	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:133869000-133870000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:133869000-133870200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:133869000-133871200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr6:133869000-133873800	Enhancers	Skeletal Muscle Male	skeletal muscle

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