Variant report

Variant	rs59883609
Chromosome Location	chr6:133864060-133864061
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57347183	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58357213	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59937049	1.00[AMR][1000 genomes]
rs73776046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133854800-133866200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:133861600-133872400	Weak transcription	HSMM	muscle
4	chr6:133862800-133869200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:133863200-133864200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133863200-133867000	Weak transcription	Fetal Stomach	stomach
7	chr6:133863200-133868400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:133863200-133868400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:133863400-133867000	Weak transcription	Fetal Lung	lung
10	chr6:133863800-133864200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:133863800-133869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:133864000-133867000	Weak transcription	HSMMtube	muscle
13	chr6:133864000-133867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:133864000-133869200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:133864000-133869400	Weak transcription	A549	lung
16	chr6:133864000-133869400	Weak transcription	NH-A	brain
17	chr6:133864000-133869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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