Variant report

Variant	rs58357314
Chromosome Location	chr3:143033562-143033563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr3:143032921-143033654	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr3:143033004-143033653	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000240888	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16853409	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16853413	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16853439	0.86[EUR][1000 genomes]
rs16853457	0.81[EUR][1000 genomes]
rs73144705	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73144721	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143022400-143048200	Weak transcription	Psoas Muscle	Psoas
4	chr3:143025600-143040000	Weak transcription	Right Atrium	heart
5	chr3:143026600-143047400	Weak transcription	Spleen	Spleen
6	chr3:143029400-143045800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:143029800-143045200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:143030200-143034600	Weak transcription	K562	blood
9	chr3:143031200-143034200	Enhancers	Dnd41	blood
10	chr3:143032000-143034400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:143032200-143033800	Enhancers	Fetal Thymus	thymus
12	chr3:143032400-143033800	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:143032400-143033800	Enhancers	Fetal Muscle Leg	muscle
14	chr3:143032400-143034600	Enhancers	Fetal Lung	lung
15	chr3:143032400-143035000	Enhancers	NHDF-Ad	bronchial
16	chr3:143032600-143033600	Enhancers	Left Ventricle	heart
17	chr3:143032600-143033800	Enhancers	Fetal Stomach	stomach
18	chr3:143032800-143033600	Enhancers	Ovary	ovary
19	chr3:143033000-143033600	Enhancers	HSMMtube	muscle
20	chr3:143033000-143033800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:143033000-143033800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:143033000-143033800	Enhancers	NHLF	lung
23	chr3:143033000-143034400	Enhancers	Fetal Brain Male	brain
24	chr3:143033000-143035000	Enhancers	Brain Hippocampus Middle	brain
25	chr3:143033200-143033800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:143033200-143033800	Enhancers	HSMM	muscle
27	chr3:143033200-143034800	Enhancers	Brain Anterior Caudate	brain
28	chr3:143033400-143034600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:143033400-143036400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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