Variant report

Variant	rs73144721
Chromosome Location	chr3:143064379-143064380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1501625	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16853413	0.84[EUR][1000 genomes]
rs16853439	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16853457	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16853469	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1875460	1.00[ASN][1000 genomes]
rs4839623	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58357314	0.86[EUR][1000 genomes]
rs59195456	1.00[ASN][1000 genomes]
rs6775025	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6779058	0.98[ASN][1000 genomes]
rs73144722	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73144729	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143061800-143066800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:143062400-143064400	Enhancers	Primary T cells from cord blood	blood
3	chr3:143062400-143065800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:143062400-143066400	Weak transcription	Fetal Thymus	thymus
5	chr3:143063200-143066400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:143063600-143064400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:143063600-143076400	Weak transcription	Brain Anterior Caudate	brain
8	chr3:143063800-143064600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:143064000-143065000	Enhancers	HUVEC	blood vessel
10	chr3:143064000-143067000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:143064000-143067200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:143064200-143064400	Flanking Active TSS	Dnd41	blood
13	chr3:143064200-143064400	Enhancers	K562	blood
14	chr3:143064200-143064600	Enhancers	Ovary	ovary
15	chr3:143064200-143067000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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