Variant report
| Variant | rs58358142 |
|---|---|
| Chromosome Location | chr10:58225055-58225056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:58225018..58228182-chr10:58230388..58232933,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16908827 | 1.00[AMR][1000 genomes] |
| rs16908833 | 1.00[AMR][1000 genomes] |
| rs16908837 | 1.00[AMR][1000 genomes] |
| rs60761978 | 1.00[AMR][1000 genomes] |
| rs73281989 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281991 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281992 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281994 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281997 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281998 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283614 | 1.00[AMR][1000 genomes] |
| rs73283620 | 1.00[AMR][1000 genomes] |
| rs73283621 | 1.00[AMR][1000 genomes] |
| rs73283625 | 1.00[AMR][1000 genomes] |
| rs73283693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283823 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752691 | chr10:57738694-58541894 | Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv895504 | chr10:58029209-58230622 | Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv831884 | chr10:58144566-58289633 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv467258 | chr10:58175630-58340191 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv551061 | chr10:58175630-58340191 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv551062 | chr10:58215451-58296254 | Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:58216600-58225600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
