Variant report

Variant	rs60761978
Chromosome Location	chr10:58128867-58128868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16908827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16908833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16908837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58358142	1.00[AMR][1000 genomes]
rs73281989	1.00[AMR][1000 genomes]
rs73281991	1.00[AMR][1000 genomes]
rs73281992	1.00[AMR][1000 genomes]
rs73281994	1.00[AMR][1000 genomes]
rs73281997	1.00[AMR][1000 genomes]
rs73281998	1.00[AMR][1000 genomes]
rs73283614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283693	1.00[AMR][1000 genomes]
rs73283823	1.00[AMR][1000 genomes]
rs73285910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831883	chr10:57947759-58139056	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv895503	chr10:58029209-58201703	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895504	chr10:58029209-58230622	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1035842	chr10:58084841-58150135	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58122800-58129600	Weak transcription	K562	blood
2	chr10:58128800-58129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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