Variant report

Variant	rs58364586
Chromosome Location	chr17:17971230-17971231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17965517..17967965-chr17:17969575..17972463,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DRG2-1	chr17:17971166-17971280	NONHSAT146139

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73303826	1.00[AMR][1000 genomes]
rs73303852	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv960429	chr17:17951047-18027679	Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv482491	chr17:17959577-18153920	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17944000-17974200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:17944000-17974200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr17:17944200-17974400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:17944400-17978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:17947000-17974400	Weak transcription	Fetal Heart	heart
6	chr17:17950000-17974400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:17950800-17974000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr17:17954200-17974200	Weak transcription	Fetal Brain Male	brain
9	chr17:17954800-17974200	Weak transcription	Stomach Mucosa	stomach
10	chr17:17962200-17974200	Weak transcription	Fetal Kidney	kidney
11	chr17:17962600-17974200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:17963000-17974200	Weak transcription	HUVEC	blood vessel
13	chr17:17963800-17971400	Strong transcription	Brain Anterior Caudate	brain
14	chr17:17964600-17971400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:17964800-17972000	Weak transcription	K562	blood
16	chr17:17964800-17974400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:17965800-17974000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr17:17965800-17974200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr17:17966000-17972000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:17966000-17974000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:17966000-17974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:17966000-17974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:17966000-17974200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr17:17966000-17974200	Weak transcription	Colon Smooth Muscle	Colon
25	chr17:17966200-17974000	Weak transcription	NH-A	brain
26	chr17:17967800-17974600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr17:17968000-17974200	Weak transcription	GM12878-XiMat	blood
28	chr17:17968400-17971400	Strong transcription	NHEK	skin
29	chr17:17968800-17974000	Weak transcription	NHDF-Ad	bronchial
30	chr17:17968800-17974200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr17:17969000-17974200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr17:17969000-17974200	Weak transcription	A549	lung
33	chr17:17969200-17971400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr17:17969200-17973800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:17969200-17974200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr17:17969200-17974200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr17:17969200-17974200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr17:17969200-17974200	Weak transcription	Right Ventricle	heart
39	chr17:17969200-17974400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:17969200-17974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr17:17969400-17972600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr17:17969400-17974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr17:17969400-17974200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr17:17969400-17974200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr17:17969600-17974200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr17:17969800-17971400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:17969800-17971400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr17:17969800-17972200	Weak transcription	HMEC	breast
49	chr17:17969800-17972400	Weak transcription	Left Ventricle	heart
50	chr17:17969800-17973600	Weak transcription	Ovary	ovary

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