Variant report

Variant	rs73303852
Chromosome Location	chr17:17897890-17897891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12103424	1.00[AMR][1000 genomes]
rs55771242	1.00[AMR][1000 genomes]
rs58246526	1.00[AMR][1000 genomes]
rs58364586	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995125	1.00[AMR][1000 genomes]
rs73295661	1.00[AMR][1000 genomes]
rs73295695	1.00[AMR][1000 genomes]
rs73297806	1.00[AMR][1000 genomes]
rs73303826	1.00[AMR][1000 genomes]
rs9905548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv510701	chr17:17850474-17955485	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17876400-17903200	Weak transcription	Gastric	stomach
2	chr17:17876600-17914600	Weak transcription	Aorta	Aorta
3	chr17:17876800-17909400	Weak transcription	Brain Substantia Nigra	brain
4	chr17:17876800-17912000	Weak transcription	Colon Smooth Muscle	Colon
5	chr17:17877000-17900000	Weak transcription	Fetal Intestine Small	intestine
6	chr17:17881800-17908200	Weak transcription	Pancreas	Pancrea
7	chr17:17886800-17909400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:17886800-17913000	Weak transcription	Fetal Lung	lung
9	chr17:17887200-17900800	Weak transcription	Left Ventricle	heart
10	chr17:17889000-17907400	Weak transcription	Brain Anterior Caudate	brain
11	chr17:17890000-17907400	Weak transcription	Brain Germinal Matrix	brain
12	chr17:17892200-17908400	Weak transcription	Lung	lung
13	chr17:17892400-17910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr17:17892600-17909800	Weak transcription	Brain Angular Gyrus	brain
15	chr17:17892800-17908000	Weak transcription	Spleen	Spleen
16	chr17:17893600-17900000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr17:17893800-17898000	Weak transcription	Right Atrium	heart
18	chr17:17894000-17903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr17:17894000-17920600	Weak transcription	Stomach Mucosa	stomach
20	chr17:17894200-17898000	Weak transcription	HSMM	muscle
21	chr17:17894600-17911400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr17:17895000-17898600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:17895000-17903400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr17:17895200-17909600	Weak transcription	NHLF	lung
25	chr17:17896800-17898000	Enhancers	A549	lung
26	chr17:17896800-17898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:17896800-17898600	Enhancers	HSMMtube	muscle
28	chr17:17896800-17898800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:17896800-17899000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr17:17897000-17898400	Enhancers	Fetal Muscle Leg	muscle
31	chr17:17897000-17898600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr17:17897000-17898600	Enhancers	Esophagus	oesophagus
33	chr17:17897200-17898600	Enhancers	Placenta	Placenta
34	chr17:17897200-17899200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr17:17897400-17898000	Enhancers	Brain Hippocampus Middle	brain
36	chr17:17897400-17898200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr17:17897400-17898200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr17:17897400-17898200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr17:17897400-17898400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr17:17897400-17898800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:17897400-17898800	Enhancers	Fetal Heart	heart
42	chr17:17897600-17898000	Enhancers	Brain Cingulate Gyrus	brain
43	chr17:17897600-17898000	Flanking Active TSS	HepG2	liver
44	chr17:17897600-17898200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr17:17897600-17898400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr17:17897600-17898600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:17897600-17898600	Enhancers	Ovary	ovary
48	chr17:17897600-17898800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr17:17897800-17898200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr17:17897800-17898200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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