Variant report

Variant	rs58364896
Chromosome Location	chr6:128511536-128511537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128504665..128506343-chr6:128510955..128513912,2	K562	blood:
2	chr6:128466074..128468137-chr6:128509732..128512228,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17055398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055406	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4129794	1.00[AMR][1000 genomes]
rs60451331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886653	chr6:128455539-128555805	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv886654	chr6:128471938-128555805	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128465600-128523200	Weak transcription	Left Ventricle	heart
2	chr6:128488200-128565200	Weak transcription	Fetal Stomach	stomach
3	chr6:128489800-128514200	Weak transcription	Gastric	stomach
4	chr6:128490000-128511600	Weak transcription	Pancreas	Pancrea
5	chr6:128490000-128520200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:128492600-128567800	Weak transcription	Ovary	ovary
7	chr6:128494400-128526000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:128495000-128523400	Weak transcription	HSMMtube	muscle
9	chr6:128499800-128513800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:128501800-128513000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:128503200-128541800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:128505400-128514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:128505800-128514200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:128505800-128515800	Weak transcription	HMEC	breast
15	chr6:128505800-128523200	Weak transcription	Fetal Thymus	thymus
16	chr6:128505800-128525600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:128505800-128525600	Weak transcription	NHEK	skin
18	chr6:128505800-128538800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:128505800-128552200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:128506000-128513000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:128506000-128513200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:128506000-128513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:128506000-128513800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:128506000-128523600	Weak transcription	HepG2	liver
25	chr6:128506000-128561000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:128506400-128515600	Weak transcription	HSMM	muscle
27	chr6:128508800-128515600	Weak transcription	Osteobl	bone
28	chr6:128508800-128515800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:128509000-128515200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:128510200-128513800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:128510200-128518800	Weak transcription	Primary B cells from cord blood	blood
32	chr6:128510200-128521000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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