Variant report

Variant	rs58366343
Chromosome Location	chr11:120484624-120484625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55998330	0.98[AFR][1000 genomes]
rs57346428	0.98[AFR][1000 genomes]
rs60432522	0.98[AFR][1000 genomes]
rs7106783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120479800-120484800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:120480200-120487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:120480200-120489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:120483200-120485000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:120483200-120485000	Flanking Active TSS	GM12878-XiMat	blood
6	chr11:120483400-120484800	Enhancers	Fetal Intestine Small	intestine
7	chr11:120483400-120485000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:120483400-120485200	Enhancers	Fetal Intestine Large	intestine
9	chr11:120483400-120485400	Enhancers	Ovary	ovary
10	chr11:120483600-120484800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:120483600-120484800	Enhancers	NHLF	lung
12	chr11:120483600-120485400	Enhancers	Placenta	Placenta
13	chr11:120484000-120485000	Enhancers	Fetal Lung	lung
14	chr11:120484200-120485000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:120484200-120485000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:120484400-120484800	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:120484400-120485000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:120484400-120485000	Bivalent Enhancer	Fetal Stomach	stomach
19	chr11:120484600-120484800	Enhancers	Right Atrium	heart
20	chr11:120484600-120484800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr11:120484600-120486600	Weak transcription	Spleen	Spleen

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