Variant report

Variant	rs58373569
Chromosome Location	chr3:88453922-88453923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1463474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56284082	1.00[AMR][1000 genomes]
rs59594456	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877148	chr3:88334311-88541582	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3507649	chr3:88348608-88460540	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3507650	chr3:88348625-88460502	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877149	chr3:88372336-88541582	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877150	chr3:88402920-88484194	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv877151	chr3:88402920-88498034	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv877152	chr3:88402920-88541582	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv999198	chr3:88410579-88491242	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv877153	chr3:88417316-88541582	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv877154	chr3:88437886-88583829	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3462161	chr3:88453595-88454116	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv5882	chr3:88453620-88454276	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3462157	chr3:88453644-88454078	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3462159	chr3:88453649-88454084	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3462158	chr3:88453673-88454042	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3462160	chr3:88453717-88454013	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3462162	chr3:88453731-88454011	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88452800-88457800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:88453800-88455000	Enhancers	Primary T cells from cord blood	blood

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