Variant report

Variant	rs58395357
Chromosome Location	chr12:118101183-118101184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17618840	0.88[ASN][1000 genomes]
rs1818618	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2090440	0.82[ASN][1000 genomes]
rs55738113	0.81[ASN][1000 genomes]
rs56352843	0.90[ASN][1000 genomes]
rs57072811	0.81[ASN][1000 genomes]
rs59064177	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7302485	0.89[ASN][1000 genomes]
rs7302879	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3365070	chr12:118100498-118102426	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118090000-118109800	Weak transcription	Pancreas	Pancrea
2	chr12:118098600-118101200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:118098600-118101800	Enhancers	HUVEC	blood vessel
4	chr12:118099400-118101200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:118099800-118102000	Weak transcription	Adipose Nuclei	Adipose
6	chr12:118100000-118101200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:118100200-118101200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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