Variant report

Variant	rs2090440
Chromosome Location	chr12:118091757-118091758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10444499	0.82[EUR][1000 genomes]
rs10735110	0.88[EUR][1000 genomes]
rs10735111	0.83[EUR][1000 genomes]
rs11068589	0.83[EUR][1000 genomes]
rs1400593	0.82[EUR][1000 genomes]
rs1517196	0.82[EUR][1000 genomes]
rs1517201	0.82[EUR][1000 genomes]
rs1517204	0.82[EUR][1000 genomes]
rs1568154	0.86[EUR][1000 genomes]
rs1568158	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1568160	0.88[EUR][1000 genomes]
rs1568161	0.88[EUR][1000 genomes]
rs17618840	0.87[ASN][1000 genomes]
rs1818618	0.89[ASN][1000 genomes]
rs1850403	0.82[EUR][1000 genomes]
rs1976755	0.86[EUR][1000 genomes]
rs2138698	0.88[EUR][1000 genomes]
rs2393240	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2393250	0.83[EUR][1000 genomes]
rs2393251	0.81[EUR][1000 genomes]
rs2650169	0.93[CEU][hapmap]
rs4570668	0.81[EUR][1000 genomes]
rs4767580	0.82[EUR][1000 genomes]
rs4767581	0.81[EUR][1000 genomes]
rs4767583	0.81[EUR][1000 genomes]
rs56352843	0.87[ASN][1000 genomes]
rs58395357	0.82[ASN][1000 genomes]
rs59064177	0.82[ASN][1000 genomes]
rs6490137	0.82[EUR][1000 genomes]
rs6490139	0.82[EUR][1000 genomes]
rs6490142	0.88[EUR][1000 genomes]
rs7298395	0.87[EUR][1000 genomes]
rs7302485	0.88[ASN][1000 genomes]
rs7302879	0.87[ASN][1000 genomes]
rs7305557	0.83[EUR][1000 genomes]
rs7306827	0.83[ASN][1000 genomes]
rs7957425	0.82[EUR][1000 genomes]
rs7965602	0.83[ASN][1000 genomes]
rs7980301	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118090000-118109800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links