Variant report

Variant	rs6490142
Chromosome Location	chr12:118094368-118094369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10444499	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10735108	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10735110	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10735111	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11068589	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1400593	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517196	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517201	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517204	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1568154	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1568158	0.83[EUR][1000 genomes]
rs1568160	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568161	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1850403	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1976755	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2090440	0.88[EUR][1000 genomes]
rs2138697	0.85[EUR][1000 genomes]
rs2138698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2393240	0.83[EUR][1000 genomes]
rs2393250	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2393251	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4570668	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767580	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4767581	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767583	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767586	0.86[EUR][1000 genomes]
rs4767587	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6490137	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6490139	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7298395	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7305557	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7957425	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7980301	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6490142	NIP30	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118090000-118109800	Weak transcription	Pancreas	Pancrea

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