Variant report

Variant	rs1568161
Chromosome Location	chr12:118084674-118084675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10444499	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10735108	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10735110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10735111	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11068589	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12826831	0.83[ASN][1000 genomes]
rs1400593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517196	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1517204	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1568154	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1568158	0.83[EUR][1000 genomes]
rs1568160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850403	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1976755	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2090440	0.88[EUR][1000 genomes]
rs2138697	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2138698	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2393240	0.83[EUR][1000 genomes]
rs2393250	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2393251	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2650169	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4570668	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4767581	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767583	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4767586	0.86[EUR][1000 genomes]
rs4767587	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6490137	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6490139	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6490142	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298395	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7305557	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7957425	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7980301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1568161	VSIG10	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118076600-118089000	Weak transcription	Pancreas	Pancrea
2	chr12:118083400-118085600	Enhancers	Fetal Brain Male	brain
3	chr12:118084200-118084800	Enhancers	Brain Germinal Matrix	brain
4	chr12:118084200-118085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:118084200-118085200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr12:118084200-118085400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:118084400-118085400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:118084600-118085200	Enhancers	Fetal Brain Female	brain

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