Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10444499	0.89[EUR][1000 genomes]
rs10735108	0.87[EUR][1000 genomes]
rs10735110	0.83[EUR][1000 genomes]
rs11068589	0.88[EUR][1000 genomes]
rs1400593	0.89[EUR][1000 genomes]
rs1517196	0.89[EUR][1000 genomes]
rs1517201	0.89[EUR][1000 genomes]
rs1517204	0.89[EUR][1000 genomes]
rs1568154	0.85[EUR][1000 genomes]
rs1568160	0.83[EUR][1000 genomes]
rs1568161	0.83[EUR][1000 genomes]
rs17585329	0.90[ASN][1000 genomes]
rs17618840	0.83[ASN][1000 genomes]
rs1818618	0.81[ASN][1000 genomes]
rs1850403	0.89[EUR][1000 genomes]
rs1976755	0.85[EUR][1000 genomes]
rs2090440	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2138698	0.83[EUR][1000 genomes]
rs2393240	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2650169	0.92[CEU][hapmap]
rs4570668	0.88[EUR][1000 genomes]
rs4767580	0.89[EUR][1000 genomes]
rs4767581	0.88[EUR][1000 genomes]
rs4767583	0.88[EUR][1000 genomes]
rs4767586	0.82[EUR][1000 genomes]
rs55738113	0.90[ASN][1000 genomes]
rs56352843	0.83[ASN][1000 genomes]
rs57072811	0.92[ASN][1000 genomes]
rs58153208	0.94[ASN][1000 genomes]
rs6490137	0.89[EUR][1000 genomes]
rs6490139	0.89[EUR][1000 genomes]
rs6490142	0.83[EUR][1000 genomes]
rs7135905	0.94[ASN][1000 genomes]
rs7138540	0.84[ASN][1000 genomes]
rs7298395	0.82[EUR][1000 genomes]
rs7302485	0.82[ASN][1000 genomes]
rs7302879	0.81[ASN][1000 genomes]
rs7305557	0.88[EUR][1000 genomes]
rs7957425	0.89[EUR][1000 genomes]
rs7980301	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1568158	VSIG10	cis	parietal	SCAN
rs1568158	NIP30	trans	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118059600-118061000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:118059600-118061000	Enhancers	HUVEC	blood vessel
3	chr12:118059800-118060600	Enhancers	NHEK	skin
4	chr12:118059800-118061000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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