Variant report

Variant	rs58399461
Chromosome Location	chr6:142679024-142679025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142628297..142630973-chr6:142676608..142679458,2	MCF-7	breast:
2	chr6:142673246..142675077-chr6:142677303..142679355,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9496326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142665600-142680200	Weak transcription	HUVEC	blood vessel
2	chr6:142671400-142679400	Weak transcription	Liver	Liver
3	chr6:142672600-142680800	Weak transcription	Fetal Brain Male	brain
4	chr6:142674800-142680400	Enhancers	Fetal Lung	lung
5	chr6:142675800-142679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:142676400-142681000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:142676800-142688600	Weak transcription	Fetal Heart	heart
8	chr6:142677000-142679200	Weak transcription	HSMM	muscle
9	chr6:142677000-142682000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:142677000-142682000	Weak transcription	Placenta	Placenta
11	chr6:142677400-142679800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:142677600-142679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:142677600-142681400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:142677600-142682200	Enhancers	A549	lung
15	chr6:142677800-142679600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:142677800-142680200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:142677800-142680200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:142677800-142681000	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:142677800-142682400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:142677800-142682400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:142678000-142679200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:142678000-142679600	Weak transcription	Fetal Thymus	thymus
23	chr6:142678000-142679600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:142678000-142680400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:142678000-142680400	Weak transcription	Thymus	Thymus
26	chr6:142678000-142682400	Weak transcription	HMEC	breast
27	chr6:142678200-142679200	Weak transcription	Primary T cells from cord blood	blood
28	chr6:142678200-142679400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:142678800-142679200	Enhancers	NHEK	skin
30	chr6:142678800-142679400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:142678800-142680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:142679000-142679400	Enhancers	Hela-S3	cervix
33	chr6:142679000-142679600	Enhancers	Fetal Kidney	kidney
34	chr6:142679000-142679600	Genic enhancers	HepG2	liver
35	chr6:142679000-142679600	Genic enhancers	NHLF	lung
36	chr6:142679000-142682200	Weak transcription	Fetal Intestine Large	intestine

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