Variant report

Variant	rs58408933
Chromosome Location	chr11:71696260-71696261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71638884..71640864-chr11:71694581..71697460,2	K562	blood:
2	chr11:71695031..71697294-chr11:71704029..71706550,2	K562	blood:

Variant related genes	Relation type
ENSG00000137522	Chromatin interaction
ENSG00000254469	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55649541	0.83[AFR][1000 genomes]
rs55673306	1.00[AFR][1000 genomes]
rs55680751	0.83[AFR][1000 genomes]
rs55718460	0.86[AFR][1000 genomes]
rs55724289	0.86[AFR][1000 genomes]
rs55804025	0.83[AFR][1000 genomes]
rs55837642	0.83[AFR][1000 genomes]
rs55860698	0.83[AFR][1000 genomes]
rs55922008	0.83[AFR][1000 genomes]
rs56160537	1.00[AFR][1000 genomes]
rs56249089	0.86[AFR][1000 genomes]
rs56270043	0.83[AFR][1000 genomes]
rs56304359	0.86[AFR][1000 genomes]
rs56666776	0.83[AFR][1000 genomes]
rs56785523	1.00[AFR][1000 genomes]
rs57683667	0.86[AFR][1000 genomes]
rs57927868	0.83[AFR][1000 genomes]
rs58219059	0.83[AFR][1000 genomes]
rs58361598	0.83[AFR][1000 genomes]
rs58724377	0.83[AFR][1000 genomes]
rs58895750	0.86[AFR][1000 genomes]
rs59382154	0.83[AFR][1000 genomes]
rs59487998	0.83[AFR][1000 genomes]
rs59564576	0.83[AFR][1000 genomes]
rs59722863	0.86[AFR][1000 genomes]
rs60381558	0.83[AFR][1000 genomes]
rs60700557	0.83[AFR][1000 genomes]
rs60909653	0.83[AFR][1000 genomes]
rs61051812	1.00[AFR][1000 genomes]
rs61318449	0.83[AFR][1000 genomes]
rs61378805	0.83[AFR][1000 genomes]
rs61537950	1.00[AFR][1000 genomes]
rs61559889	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71660400-71701200	Weak transcription	Gastric	stomach
2	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
3	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
4	chr11:71663000-71698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:71668800-71699000	Weak transcription	Right Ventricle	heart
6	chr11:71670600-71701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:71672200-71698800	Weak transcription	NHEK	skin
8	chr11:71672200-71701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
10	chr11:71672400-71701000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:71672600-71698400	Weak transcription	Spleen	Spleen
13	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:71673000-71697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:71673000-71698800	Weak transcription	Ovary	ovary
16	chr11:71673000-71701200	Weak transcription	Pancreas	Pancrea
17	chr11:71673600-71698800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:71673800-71698000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:71673800-71698400	Weak transcription	NHLF	lung
21	chr11:71673800-71701200	Weak transcription	Colonic Mucosa	Colon
22	chr11:71673800-71701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:71673800-71707800	Weak transcription	Fetal Heart	heart
24	chr11:71674000-71710600	Weak transcription	Brain Germinal Matrix	brain
25	chr11:71674200-71697400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:71675000-71701200	Weak transcription	Fetal Brain Female	brain
27	chr11:71677000-71709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:71678000-71710600	Weak transcription	HMEC	breast
30	chr11:71681000-71698000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:71681200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:71681600-71698600	Weak transcription	Placenta	Placenta
33	chr11:71681600-71698800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:71684000-71697800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:71684200-71709000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:71685800-71698600	Strong transcription	K562	blood
37	chr11:71687000-71698400	Weak transcription	NHDF-Ad	bronchial
38	chr11:71687800-71703000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:71688600-71703200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:71688800-71698200	Strong transcription	A549	lung
41	chr11:71689000-71701200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:71689000-71711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:71689400-71697200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:71689600-71702400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:71690000-71696600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:71690200-71699600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:71691200-71697000	Strong transcription	Fetal Intestine Small	intestine
48	chr11:71691200-71697000	Weak transcription	Hela-S3	cervix
49	chr11:71691400-71701600	Weak transcription	Brain Angular Gyrus	brain
50	chr11:71691400-71701600	Weak transcription	Brain Anterior Caudate	brain

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