Variant report

Variant	rs59487998
Chromosome Location	chr11:71890857-71890858
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71814495..71816095-chr11:71889921..71892170,2	MCF-7	breast:
2	chr11:71851522..71853498-chr11:71890827..71892489,2	K562	blood:
3	chr11:71887728..71891423-chr11:71933064..71936414,3	MCF-7	breast:
4	chr11:71822984..71825234-chr11:71889608..71891986,2	K562	blood:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000110200	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55649541	1.00[AFR][1000 genomes]
rs55673306	0.83[AFR][1000 genomes]
rs55680751	1.00[AFR][1000 genomes]
rs55804025	1.00[AFR][1000 genomes]
rs55837642	1.00[AFR][1000 genomes]
rs55860698	1.00[AFR][1000 genomes]
rs55922008	1.00[AFR][1000 genomes]
rs56160537	0.83[AFR][1000 genomes]
rs56270043	1.00[AFR][1000 genomes]
rs56666776	1.00[AFR][1000 genomes]
rs57927868	1.00[AFR][1000 genomes]
rs58219059	1.00[AFR][1000 genomes]
rs58361598	1.00[AFR][1000 genomes]
rs58408933	0.83[AFR][1000 genomes]
rs58724377	1.00[AFR][1000 genomes]
rs59382154	1.00[AFR][1000 genomes]
rs59564576	1.00[AFR][1000 genomes]
rs59782279	0.83[AFR][1000 genomes]
rs60381558	1.00[AFR][1000 genomes]
rs60700557	1.00[AFR][1000 genomes]
rs60909653	1.00[AFR][1000 genomes]
rs61318449	1.00[AFR][1000 genomes]
rs61378805	1.00[AFR][1000 genomes]
rs61559889	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3493111	chr11:71850822-71893073	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3493112	chr11:71850822-71893073	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv435918	chr11:71851427-71890983	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3359634	chr11:71851533-71892403	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2513904	chr11:71852934-71892793	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv972042	chr11:71887920-71894534	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71886000-71892600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:71886200-71891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:71886400-71891000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:71888200-71895800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:71889600-71892600	Weak transcription	Fetal Intestine Large	intestine
6	chr11:71889600-71900200	Weak transcription	Fetal Intestine Small	intestine
7	chr11:71890000-71891200	Enhancers	Hela-S3	cervix
8	chr11:71890400-71891600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:71890400-71892000	Weak transcription	Right Ventricle	heart
10	chr11:71890600-71891800	Enhancers	NHEK	skin
11	chr11:71890800-71891000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
12	chr11:71890800-71891000	Active TSS	GM12878-XiMat	blood
13	chr11:71890800-71892000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:71890800-71895400	Enhancers	HMEC	breast

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