Variant report

Variant	rs58411827
Chromosome Location	chr11:17760746-17760747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57009711	1.00[AMR][1000 genomes]
rs59135807	1.00[AMR][1000 genomes]
rs73420055	1.00[AMR][1000 genomes]
rs73420058	1.00[AMR][1000 genomes]
rs73420070	1.00[AMR][1000 genomes]
rs73420081	1.00[AMR][1000 genomes]
rs73420090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1037585	chr11:17730586-17768346	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv521511	chr11:17749028-17771487	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17755800-17761200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
2	chr11:17757000-17771800	Weak transcription	Right Atrium	heart
3	chr11:17757200-17760800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:17757600-17761200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:17757600-17761400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:17757600-17761600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:17757800-17760800	Flanking Active TSS	Fetal Brain Female	brain
8	chr11:17757800-17762000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr11:17758000-17761000	Weak transcription	Pancreas	Pancrea
10	chr11:17758800-17761200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:17759000-17761000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr11:17759000-17761000	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr11:17759200-17760800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr11:17759200-17761200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:17759600-17761400	Active TSS	Brain Anterior Caudate	brain
16	chr11:17759600-17761600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:17760000-17761200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr11:17760000-17761200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr11:17760000-17761600	Active TSS	Brain Angular Gyrus	brain
20	chr11:17760200-17761400	Flanking Active TSS	Fetal Brain Male	brain
21	chr11:17760200-17761800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:17760400-17760800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
23	chr11:17760400-17760800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
24	chr11:17760400-17761000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr11:17760400-17761000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:17760400-17761200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr11:17760400-17761400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:17760400-17761600	Active TSS	Brain Cingulate Gyrus	brain
29	chr11:17760600-17760800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr11:17760600-17760800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr11:17760600-17760800	Bivalent Enhancer	Thymus	Thymus
32	chr11:17760600-17760800	Bivalent Enhancer	K562	blood
33	chr11:17760600-17764200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:17760600-17765600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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