Variant report

Variant	rs73420058
Chromosome Location	chr11:17721761-17721762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57009711	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411827	1.00[AMR][1000 genomes]
rs59135807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420081	1.00[AMR][1000 genomes]
rs73420090	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
2	chr11:17715200-17722000	Enhancers	HSMM	muscle
3	chr11:17717600-17721800	Enhancers	HSMMtube	muscle
4	chr11:17719000-17724400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:17720800-17721800	Enhancers	Placenta	Placenta
6	chr11:17720800-17721800	Enhancers	K562	blood
7	chr11:17721000-17721800	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:17721000-17722200	Weak transcription	Fetal Lung	lung
9	chr11:17721200-17723200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:17721200-17723600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:17721600-17722000	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links