Variant report

Variant	rs58421112
Chromosome Location	chr8:125138077-125138078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11993745	1.00[AMR][1000 genomes]
rs57234689	0.86[AFR][1000 genomes]
rs58067650	1.00[AMR][1000 genomes]
rs59080602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59527092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59571259	0.89[AFR][1000 genomes]
rs60439335	1.00[AMR][1000 genomes]
rs61048327	1.00[AMR][1000 genomes]
rs73334215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334219	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125121800-125142000	Weak transcription	Stomach Mucosa	stomach
2	chr8:125135400-125139200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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