Variant report

Variant	rs58428751
Chromosome Location	chr7:15503249-15503250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10215514	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10215515	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10215523	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10215704	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10215718	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10227659	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10232936	0.89[ASN][1000 genomes]
rs10233575	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10234258	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10260727	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10261081	0.95[ASN][1000 genomes]
rs10268895	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10276620	0.96[ASN][1000 genomes]
rs10277490	0.88[ASN][1000 genomes]
rs10278280	0.89[ASN][1000 genomes]
rs10278392	0.96[ASN][1000 genomes]
rs1072291	0.81[ASN][1000 genomes]
rs1072292	0.81[ASN][1000 genomes]
rs11770008	0.85[ASN][1000 genomes]
rs11972622	0.96[ASN][1000 genomes]
rs11977436	0.90[ASN][1000 genomes]
rs11977850	0.85[ASN][1000 genomes]
rs11982985	0.90[ASN][1000 genomes]
rs12536296	0.90[ASN][1000 genomes]
rs12699717	0.85[ASN][1000 genomes]
rs12699718	0.85[ASN][1000 genomes]
rs13222678	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17168761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2164394	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2389409	0.83[ASN][1000 genomes]
rs4130419	0.89[ASN][1000 genomes]
rs4130420	0.84[ASN][1000 genomes]
rs4133184	0.91[ASN][1000 genomes]
rs4133185	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4484578	0.85[ASN][1000 genomes]
rs4721442	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55905169	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57137758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461174	0.85[ASN][1000 genomes]
rs6461175	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6461176	0.96[ASN][1000 genomes]
rs6461180	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6461181	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6461182	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6461183	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6461184	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6461185	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6461187	0.84[ASN][1000 genomes]
rs6951399	0.93[ASN][1000 genomes]
rs6958449	0.90[ASN][1000 genomes]
rs6958650	0.87[ASN][1000 genomes]
rs6969428	0.96[ASN][1000 genomes]
rs6978232	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781014	0.84[ASN][1000 genomes]
rs7782814	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7783003	0.83[ASN][1000 genomes]
rs7786405	0.85[ASN][1000 genomes]
rs7787350	0.83[ASN][1000 genomes]
rs7787993	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7812114	0.80[ASN][1000 genomes]
rs9639237	0.85[ASN][1000 genomes]
rs9942615	0.85[ASN][1000 genomes]
rs9942650	0.85[ASN][1000 genomes]
rs9942665	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606295	chr7:15397449-15547950	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1031116	chr7:15428343-15568587	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1028545	chr7:15440202-15554763	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538747	chr7:15440202-15554763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv887729	chr7:15444355-15580078	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv606296	chr7:15468199-15538772	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv887730	chr7:15482111-15580078	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv887731	chr7:15486895-15580078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15496000-15504800	Enhancers	NHDF-Ad	bronchial
2	chr7:15499200-15503800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:15499200-15504800	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:15500400-15504600	Enhancers	Osteobl	bone
5	chr7:15500600-15504800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:15500600-15504800	Enhancers	NHLF	lung
7	chr7:15501400-15503600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:15502000-15504600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:15502400-15504800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:15502600-15503800	Enhancers	Fetal Stomach	stomach
11	chr7:15502600-15504000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:15502600-15504800	Enhancers	Adipose Nuclei	Adipose
13	chr7:15502800-15504000	Enhancers	Fetal Heart	heart
14	chr7:15503000-15503400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:15503000-15504000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:15503000-15505000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:15503200-15503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:15503200-15503600	Weak transcription	Fetal Lung	lung
19	chr7:15503200-15504000	Active TSS	Stomach Smooth Muscle	stomach

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