Variant report

Variant	rs58431502
Chromosome Location	chr7:149976867-149976868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55732298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57637449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330319	1.00[AMR][1000 genomes]
rs61322575	1.00[AMR][1000 genomes]
rs6953531	1.00[AMR][1000 genomes]
rs73728108	1.00[AMR][1000 genomes]
rs73728111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73728113	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73728114	1.00[AMR][1000 genomes]
rs73728117	1.00[AMR][1000 genomes]
rs7788084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889435	chr7:149585379-150013393	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv889452	chr7:149838371-150003208	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv970966	chr7:149961366-150002640	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149953600-149983600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:149959200-149980800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:149959200-149986200	Weak transcription	Lung	lung
4	chr7:149961600-149978200	Weak transcription	Pancreas	Pancrea
5	chr7:149962000-149983600	Weak transcription	Liver	Liver
6	chr7:149974200-149989000	Weak transcription	Esophagus	oesophagus
7	chr7:149975400-149977400	Enhancers	Brain Germinal Matrix	brain
8	chr7:149976400-149977000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:149976400-149977200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:149976400-149993200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:149976600-149977400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:149976600-149977600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:149976800-149977800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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