Variant report

Variant	rs73728114
Chromosome Location	chr7:150011414-150011415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150004469..150007293-chr7:150009416..150012608,5	K562	blood:
2	chr7:150011196..150014151-chr7:150016910..150019220,3	MCF-7	breast:
3	chr7:150009392..150012620-chr7:150013659..150016251,3	MCF-7	breast:
4	chr7:150011128..150013458-chr7:150017252..150018942,2	MCF-7	breast:
5	chr7:150010873..150012511-chr7:150013299..150015107,2	MCF-7	breast:
6	chr7:150011213..150016878-chr7:150064606..150067835,7	K562	blood:
7	chr7:150010085..150013848-chr7:150064824..150067454,3	K562	blood:
8	chr7:149568907..149571254-chr7:150010164..150012531,2	K562	blood:
9	chr7:150009132..150011651-chr7:150053831..150057388,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204934	Chromatin interaction
ENSG00000214022	Chromatin interaction
ENSG00000171130	Chromatin interaction
ENSG00000196456	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55732298	1.00[AMR][1000 genomes]
rs57637449	1.00[AMR][1000 genomes]
rs58431502	1.00[AMR][1000 genomes]
rs59330319	1.00[AMR][1000 genomes]
rs61322575	1.00[AMR][1000 genomes]
rs6953531	1.00[AMR][1000 genomes]
rs73728108	1.00[AMR][1000 genomes]
rs73728111	1.00[AMR][1000 genomes]
rs73728113	1.00[AMR][1000 genomes]
rs73728117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7788084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889435	chr7:149585379-150013393	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv508490	chr7:150006068-150051241	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149984200-150012400	Weak transcription	Liver	Liver
2	chr7:149984200-150019400	Weak transcription	Colonic Mucosa	Colon
3	chr7:149992400-150018000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:150003800-150016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:150004000-150019000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:150007000-150015000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:150007600-150018000	Weak transcription	Fetal Intestine Large	intestine
8	chr7:150008800-150011600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:150008800-150011600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr7:150009400-150017000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:150009400-150020000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:150009600-150011600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:150009600-150016000	Weak transcription	GM12878-XiMat	blood
14	chr7:150009800-150014800	Weak transcription	NH-A	brain
15	chr7:150009800-150017000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:150010200-150011600	Enhancers	Stomach Mucosa	stomach
17	chr7:150010200-150017000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:150010400-150014000	Weak transcription	NHLF	lung
19	chr7:150010400-150018200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:150010600-150011600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr7:150010800-150011600	Transcr. at gene 5' and 3'	K562	blood
22	chr7:150011000-150019000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:150011000-150019600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:150011200-150016400	Weak transcription	Esophagus	oesophagus
25	chr7:150011200-150019200	Weak transcription	Spleen	Spleen
26	chr7:150011400-150011600	Enhancers	Hela-S3	cervix
27	chr7:150011400-150012400	Weak transcription	Pancreas	Pancrea
28	chr7:150011400-150012400	Weak transcription	HepG2	liver
29	chr7:150011400-150014200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:150011400-150014800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:150011400-150015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:150011400-150016800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:150011400-150017200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:150011400-150017600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr7:150011400-150019000	Weak transcription	Gastric	stomach

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