Variant report

Variant	rs58440985
Chromosome Location	chr12:43379126-43379127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12306560	0.83[ASN][1000 genomes]
rs12317369	0.91[ASN][1000 genomes]
rs1435712	0.83[ASN][1000 genomes]
rs1520819	1.00[ASN][1000 genomes]
rs1520820	0.83[ASN][1000 genomes]
rs2043553	0.91[ASN][1000 genomes]
rs2407186	1.00[AMR][1000 genomes]
rs57076580	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57735610	0.83[ASN][1000 genomes]
rs58957660	0.83[ASN][1000 genomes]
rs59607386	1.00[ASN][1000 genomes]
rs59608717	1.00[ASN][1000 genomes]
rs59883234	1.00[ASN][1000 genomes]
rs60668239	0.83[ASN][1000 genomes]
rs61017292	0.91[ASN][1000 genomes]
rs71455434	0.91[ASN][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43368600-43379200	Weak transcription	Fetal Heart	heart
2	chr12:43373200-43381200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:43374000-43381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:43374200-43379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:43376400-43379200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr12:43378400-43381200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:43378600-43380600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:43378800-43379200	Enhancers	HSMMtube	muscle
9	chr12:43378800-43379400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:43378800-43381000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:43378800-43381200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:43378800-43381400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:43378800-43381600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:43378800-43381600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:43378800-43381800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:43379000-43379200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr12:43379000-43379400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:43379000-43379600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:43379000-43379600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:43379000-43379800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:43379000-43380400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr12:43379000-43380400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links