Variant report

Variant	rs58957660
Chromosome Location	chr12:43329971-43329972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10459291	1.00[AMR][1000 genomes]
rs11181704	1.00[AMR][1000 genomes]
rs11181718	1.00[AMR][1000 genomes]
rs11181723	1.00[AMR][1000 genomes]
rs11181725	1.00[AMR][1000 genomes]
rs11181727	1.00[AMR][1000 genomes]
rs11181735	1.00[AMR][1000 genomes]
rs11181736	1.00[AMR][1000 genomes]
rs11181738	1.00[AMR][1000 genomes]
rs11181740	1.00[AMR][1000 genomes]
rs11181741	1.00[AMR][1000 genomes]
rs11181742	1.00[AMR][1000 genomes]
rs11181743	1.00[AMR][1000 genomes]
rs11181785	1.00[AMR][1000 genomes]
rs11181788	1.00[AMR][1000 genomes]
rs11181790	1.00[AMR][1000 genomes]
rs11181793	1.00[AMR][1000 genomes]
rs11181799	1.00[AMR][1000 genomes]
rs11181800	1.00[AMR][1000 genomes]
rs11181802	1.00[AMR][1000 genomes]
rs11181803	1.00[AMR][1000 genomes]
rs12227246	1.00[AMR][1000 genomes]
rs12306560	1.00[ASN][1000 genomes]
rs12317369	0.91[ASN][1000 genomes]
rs1435712	1.00[ASN][1000 genomes]
rs1520819	0.83[ASN][1000 genomes]
rs1520820	1.00[ASN][1000 genomes]
rs17092406	0.96[ASN][1000 genomes]
rs2043553	0.91[ASN][1000 genomes]
rs57735610	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58440985	0.83[ASN][1000 genomes]
rs59607386	0.83[ASN][1000 genomes]
rs59608717	0.83[ASN][1000 genomes]
rs59883234	0.83[ASN][1000 genomes]
rs59894001	1.00[AMR][1000 genomes]
rs60308009	1.00[AMR][1000 genomes]
rs60441026	0.96[ASN][1000 genomes]
rs60668239	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9634307	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43328800-43330200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:43329000-43330000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:43329000-43330200	Enhancers	Fetal Lung	lung
4	chr12:43329000-43331000	Enhancers	HSMM	muscle
5	chr12:43329200-43330400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:43329200-43331000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:43329200-43331200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:43329400-43330000	Enhancers	NHEK	skin
9	chr12:43329400-43330200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:43329400-43330400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:43329400-43330400	Enhancers	HMEC	breast
12	chr12:43329600-43330200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:43329600-43330200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:43329600-43330200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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