Variant report

Variant	rs58445097
Chromosome Location	chr6:166843127-166843128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58052402	0.91[AFR][1000 genomes]
rs59036752	1.00[AFR][1000 genomes]
rs59153074	1.00[AFR][1000 genomes]
rs60064777	1.00[AFR][1000 genomes]
rs60081076	1.00[AFR][1000 genomes]
rs60852819	1.00[AFR][1000 genomes]
rs61138081	1.00[AFR][1000 genomes]
rs73267298	1.00[AFR][1000 genomes]
rs73269209	0.91[AFR][1000 genomes]
rs73269211	0.91[AFR][1000 genomes]
rs73269214	0.91[AFR][1000 genomes]
rs73269217	0.91[AFR][1000 genomes]
rs73269234	0.91[AFR][1000 genomes]
rs73269238	1.00[AFR][1000 genomes]
rs73269240	1.00[AFR][1000 genomes]
rs73269243	1.00[AFR][1000 genomes]
rs73269245	1.00[AFR][1000 genomes]
rs73269249	1.00[AFR][1000 genomes]
rs73269251	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv823928	chr6:166838283-166844026	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166824600-166844800	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:166825000-166849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:166825200-166853000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
7	chr6:166826600-166848800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:166827600-166867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:166829800-166843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:166829800-166845200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:166829800-166845600	Weak transcription	HSMMtube	muscle
13	chr6:166829800-166847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:166829800-166851800	Weak transcription	Fetal Brain Male	brain
15	chr6:166830000-166845400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:166830000-166866600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:166833200-166864400	Weak transcription	Fetal Kidney	kidney
18	chr6:166833200-166879000	Weak transcription	NH-A	brain
19	chr6:166833400-166854800	Weak transcription	Primary B cells from cord blood	blood
20	chr6:166833400-166879000	Weak transcription	HSMM	muscle
21	chr6:166833600-166843200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:166833600-166843800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:166833600-166843800	Weak transcription	Fetal Intestine Small	intestine
24	chr6:166833600-166845400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:166833600-166859600	Weak transcription	HMEC	breast
26	chr6:166834000-166866400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:166834200-166863800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:166834200-166879400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:166834600-166862000	Weak transcription	NHDF-Ad	bronchial
30	chr6:166835000-166849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:166835200-166847600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:166836400-166844000	Weak transcription	Thymus	Thymus
33	chr6:166836400-166853000	Weak transcription	Fetal Lung	lung
34	chr6:166837000-166843400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:166837400-166843600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:166837400-166843800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:166837600-166843200	Weak transcription	Adipose Nuclei	Adipose
38	chr6:166837600-166843200	Weak transcription	Liver	Liver
39	chr6:166837600-166843200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:166837600-166843800	Weak transcription	Osteobl	bone
41	chr6:166837600-166848200	Weak transcription	Esophagus	oesophagus
42	chr6:166837800-166843200	Weak transcription	Ovary	ovary
43	chr6:166837800-166843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:166837800-166844800	Weak transcription	NHLF	lung
45	chr6:166837800-166849000	Weak transcription	Primary T cells from cord blood	blood
46	chr6:166838000-166843400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:166838000-166856000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:166838200-166843400	Weak transcription	Brain Anterior Caudate	brain
49	chr6:166838200-166843600	Weak transcription	Spleen	Spleen
50	chr6:166838200-166843800	Weak transcription	Aorta	Aorta

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