Variant report

Variant	rs60081076
Chromosome Location	chr6:166833918-166833919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166833688..166834541-chr6:166926014..166926681,2	MCF-7	breast:
2	chr6:166832801..166835277-chr6:166837507..166839405,2	K562	blood:
3	chr6:166755841..166757468-chr6:166833697..166836017,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58052402	0.91[AFR][1000 genomes]
rs58445097	1.00[AFR][1000 genomes]
rs59036752	1.00[AFR][1000 genomes]
rs59153074	1.00[AFR][1000 genomes]
rs60064777	1.00[AFR][1000 genomes]
rs60852819	1.00[AFR][1000 genomes]
rs61138081	1.00[AFR][1000 genomes]
rs73267298	1.00[AFR][1000 genomes]
rs73269209	0.91[AFR][1000 genomes]
rs73269211	0.91[AFR][1000 genomes]
rs73269214	0.91[AFR][1000 genomes]
rs73269217	0.91[AFR][1000 genomes]
rs73269234	0.91[AFR][1000 genomes]
rs73269238	1.00[AFR][1000 genomes]
rs73269240	1.00[AFR][1000 genomes]
rs73269243	1.00[AFR][1000 genomes]
rs73269245	1.00[AFR][1000 genomes]
rs73269249	1.00[AFR][1000 genomes]
rs73269251	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
4	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
6	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:166822800-166836200	Weak transcription	Ovary	ovary
14	chr6:166823600-166838000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:166823800-166835000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:166823800-166836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:166824400-166836800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:166824600-166844800	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:166825000-166837600	Strong transcription	Adipose Nuclei	Adipose
21	chr6:166825000-166849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:166825200-166853000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
24	chr6:166825600-166835200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr6:166825800-166834200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:166825800-166834200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:166826000-166834400	Strong transcription	Brain Angular Gyrus	brain
28	chr6:166826400-166837600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:166826600-166848800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:166827000-166835000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:166827600-166836200	Enhancers	Fetal Thymus	thymus
33	chr6:166827600-166867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:166828000-166835000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:166828200-166838400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:166828400-166836000	Enhancers	Dnd41	blood
37	chr6:166829000-166834600	Strong transcription	NHDF-Ad	bronchial
38	chr6:166829000-166834800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:166829000-166837200	Strong transcription	Brain Anterior Caudate	brain
40	chr6:166829000-166838000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:166829200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:166829800-166834200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:166829800-166836000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:166829800-166836000	Weak transcription	Fetal Lung	lung
45	chr6:166829800-166838600	Strong transcription	Lung	lung
46	chr6:166829800-166843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:166829800-166845200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:166829800-166845600	Weak transcription	HSMMtube	muscle
49	chr6:166829800-166847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:166829800-166851800	Weak transcription	Fetal Brain Male	brain

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