Variant report

Variant	rs58445553
Chromosome Location	chr3:179555022-179555023
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73058638	1.00[AMR][1000 genomes]
rs73058639	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058642	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9862040	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9864111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179548600-179559000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:179552000-179560200	Strong transcription	Dnd41	blood
5	chr3:179553200-179571000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:179553400-179560800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:179553600-179576200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:179554000-179555200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:179554000-179590400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:179554200-179556200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:179554400-179570800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:179555000-179555400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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