Variant report

Variant	rs9864111
Chromosome Location	chr3:179552467-179552468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58445553	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058638	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847559	0.80[AFR][1000 genomes]
rs9847849	0.80[AFR][1000 genomes]
rs9862040	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881715	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179543200-179552800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:179544600-179552600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:179544600-179552800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:179545200-179552800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:179548600-179559000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:179550200-179553600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:179551200-179555000	Weak transcription	Fetal Heart	heart
10	chr3:179552000-179553000	Enhancers	Ovary	ovary
11	chr3:179552000-179560200	Strong transcription	Dnd41	blood
12	chr3:179552200-179553000	Genic enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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