Variant report

Variant	rs58465807
Chromosome Location	chr10:50095350-50095351
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57137325	1.00[AMR][1000 genomes]
rs60077534	1.00[AMR][1000 genomes]
rs73294648	1.00[AMR][1000 genomes]
rs73294668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308057	1.00[AMR][1000 genomes]
rs73308058	1.00[AMR][1000 genomes]
rs73310032	1.00[AMR][1000 genomes]
rs73310060	1.00[AMR][1000 genomes]
rs73310094	1.00[AFR][1000 genomes]
rs73312012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50086800-50098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
7	chr10:50090800-50098000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:50091200-50098000	Weak transcription	Spleen	Spleen
9	chr10:50091800-50096600	Weak transcription	GM12878-XiMat	blood
10	chr10:50092000-50097400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50092600-50106800	Weak transcription	Primary T cells from cord blood	blood
12	chr10:50093200-50096600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50093600-50096600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:50094600-50098000	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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