Variant report

Variant	rs60077534
Chromosome Location	chr10:49955346-49955347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57137325	1.00[AMR][1000 genomes]
rs58465807	1.00[AMR][1000 genomes]
rs60005073	1.00[AMR][1000 genomes]
rs73294648	1.00[AMR][1000 genomes]
rs73294668	1.00[AMR][1000 genomes]
rs73304244	1.00[AMR][1000 genomes]
rs73308057	1.00[AMR][1000 genomes]
rs73308058	1.00[AMR][1000 genomes]
rs73310032	1.00[AMR][1000 genomes]
rs73310060	1.00[AMR][1000 genomes]
rs73312012	1.00[AMR][1000 genomes]
rs73312045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49931000-49956800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:49934400-49955800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:49934600-49955800	Strong transcription	Primary B cells from cord blood	blood
5	chr10:49939600-49956200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:49948600-49957200	Weak transcription	Esophagus	oesophagus
7	chr10:49952000-49955800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:49952000-49956400	Weak transcription	Spleen	Spleen
9	chr10:49952000-49960800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:49953400-49960200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:49954200-49956000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:49954200-49957400	Weak transcription	Lung	lung
13	chr10:49954200-49957600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:49954800-49955400	ZNF genes & repeats	GM12878-XiMat	blood
15	chr10:49955000-49956200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:49955000-49958000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:49955200-49955800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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