Variant report

Variant	rs58468060
Chromosome Location	chr11:9757245-9757246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9756797..9759771-chr11:9761675..9763540,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1056593	0.85[EUR][1000 genomes]
rs7933634	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9730600-9758200	Weak transcription	Esophagus	oesophagus
3	chr11:9733600-9761600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:9733800-9759800	Weak transcription	Fetal Heart	heart
5	chr11:9740000-9758000	Weak transcription	Aorta	Aorta
6	chr11:9740000-9762000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:9742200-9758400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:9742200-9759800	Weak transcription	Fetal Kidney	kidney
9	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
10	chr11:9744600-9761400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:9744800-9758000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:9745000-9775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:9745600-9758600	Strong transcription	NHDF-Ad	bronchial
14	chr11:9749000-9761800	Weak transcription	Small Intestine	intestine
15	chr11:9749000-9764400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:9749000-9764400	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr11:9749200-9758000	Weak transcription	Stomach Mucosa	stomach
18	chr11:9749400-9757800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:9749400-9757800	Strong transcription	HSMM	muscle
20	chr11:9749400-9758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:9749400-9758800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:9749400-9764400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:9749600-9764400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:9750200-9758400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:9751000-9764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:9751400-9758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:9753400-9757800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:9753800-9764400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:9754000-9758400	Strong transcription	Left Ventricle	heart
30	chr11:9754000-9764400	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:9754200-9757400	Strong transcription	NH-A	brain
32	chr11:9754200-9757800	Strong transcription	Osteobl	bone
33	chr11:9754200-9764400	Strong transcription	Adipose Nuclei	Adipose
34	chr11:9754400-9757600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:9754400-9757800	Weak transcription	HepG2	liver
36	chr11:9754400-9758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:9754400-9761600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:9754400-9764400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:9754800-9758000	Weak transcription	Liver	Liver
40	chr11:9754800-9758200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:9754800-9764400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:9755000-9758000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:9755000-9758000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:9755000-9758000	Weak transcription	Lung	lung
45	chr11:9755000-9758000	Weak transcription	Ovary	ovary
46	chr11:9755000-9758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:9755000-9758400	Weak transcription	Thymus	Thymus
48	chr11:9755000-9758400	Weak transcription	Spleen	Spleen
49	chr11:9755000-9759600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:9755000-9759800	Weak transcription	H9 Cell Line	embryonic stem cell

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