Variant report

Variant	rs58468885
Chromosome Location	chr5:151694472-151694473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs4521459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5009290	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55702422	1.00[AMR][1000 genomes]
rs55876908	1.00[AMR][1000 genomes]
rs59357534	1.00[AMR][1000 genomes]
rs61362109	1.00[AMR][1000 genomes]
rs61543849	1.00[AMR][1000 genomes]
rs61693801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579930	1.00[AMR][1000 genomes]
rs73796853	1.00[AMR][1000 genomes]
rs73796854	1.00[AMR][1000 genomes]
rs73796855	1.00[AMR][1000 genomes]
rs73796856	0.87[AMR][1000 genomes]
rs73796857	1.00[AMR][1000 genomes]
rs73796858	1.00[AMR][1000 genomes]
rs73796859	1.00[AMR][1000 genomes]
rs73796860	1.00[AMR][1000 genomes]
rs73796861	1.00[AMR][1000 genomes]
rs73796862	1.00[AMR][1000 genomes]
rs73796864	1.00[AMR][1000 genomes]
rs73796865	1.00[AMR][1000 genomes]
rs73796866	1.00[AMR][1000 genomes]
rs73796867	1.00[AMR][1000 genomes]
rs73796869	1.00[AMR][1000 genomes]
rs73796870	1.00[AMR][1000 genomes]
rs73796871	1.00[AMR][1000 genomes]
rs73796872	1.00[AMR][1000 genomes]
rs73796873	1.00[AMR][1000 genomes]
rs73796874	1.00[AMR][1000 genomes]
rs73796875	1.00[AMR][1000 genomes]
rs73796876	1.00[AMR][1000 genomes]
rs73796877	1.00[AMR][1000 genomes]
rs73796879	1.00[AMR][1000 genomes]
rs73796880	1.00[AMR][1000 genomes]
rs73796881	1.00[AMR][1000 genomes]
rs73796882	1.00[AMR][1000 genomes]
rs73796884	1.00[AMR][1000 genomes]
rs73796885	1.00[AMR][1000 genomes]
rs73796886	1.00[AMR][1000 genomes]
rs73796890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711391	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719359	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7733804	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7733843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151694400-151694600	Enhancers	Gastric	stomach

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